K10B3.5

WormBase ID: WBGene00019611

WormBase description: Is predicted to have DNA-binding transcription factor activity.

Reporter verification: Whole-genome sequencing indicated that the GFP tags another TF, K10B3.5 rather than NFX-1
Primers used to verify fosmid reporter: 5'-ACCTGATGCGGCAGTTTT-3'

Strain name: SYS582

Cross: OP507 x JIM113

Strain genotype: ujIs113 (pie-1p::mCherry::H2B; nhr-2p::mCherry::his-24::let858 3'UTR; unc-119(+)) II; wgIs507 (K10B3.5::TY1::EGFP::3xFLAG + unc-119(+))

Expression pattern: Not expressed

Lineage expression pattern

350 stage

600 stage

3D expression pattern

4-cells

8-cells

15-cells

28-cells

~50-cells

~100-cells

~200-cells

~350-cells

~500-cells

~600-cells

600-cells

bean-stage

Inferred TF relationships

Based on expression similarity (strong, medium, weak): NA


Based on ChIP-seq (directly from ModERN database, targets from L1 stage ChIP-seq data are underlined)

Targeting: no-data

Targeted by: PHA-4

Based on reannotated ChIP-seq (peaks are assigned to a target if it is located within 2 kb relative to the transcription start site; targets from L1 stage ChIP-seq data are underlined)

Targeting: no-data

Targeted by: CEH-18, CEH-31, CEH-34, CEH-39, ELT-1, ELT-2, HLH-30, LIN-13, LSY-2, MEP-1, NFYA-1, PAX-1, PHA-4, RNT-1, UNC-42