LIN-15B

WormBase ID: WBGene00023497

WormBase description: Is predicted to have DNA binding activity and metal ion binding activity. Is involved in negative regulation of Ras protein signal transduction; negative regulation of vulval development; and regulation of cell fate specification. Is expressed in several structures, including anterior gonad arm; oocyte; and somatic cell.

KI information: GFP knockin at C-terminus

Reporter verification:Verified by comparing expression pattern to the literature (Paix et al., 2014)

Strain name: SYS147

KI background: JIM113

Strain genotype: ujIs113 (pie-1p::mCherry::H2B; nhr-2p::mCherry::his-24::let858 3'UTR; unc-119(+)) II; lin-15B (ax2061 [lin-15B::gfp]) X

Expression pattern: Non-specific

Lineage expression pattern

350 stage

600 stage

3D expression pattern

4-cells

8-cells

15-cells

28-cells

~50-cells

~100-cells

~200-cells

~350-cells

~500-cells

~600-cells

600-cells

bean-stage

Inferred TF relationships

Based on expression similarity (strong, medium, weak): NA


Based on ChIP-seq (directly from ModERN database, targets from L1 stage ChIP-seq data are underlined)

Targeting: no-data

Targeted by: BLMP-1, CEH-31, CEH-34, HLH-1, HLH-30, HMG-4, LIN-13, MEP-1, NFYA-1, PHA-4, RNT-1, SYD-9, TBX-2, C16A3.4, CEH-82, DPL-1, DSC-1, EFL-1, ELT-3, IRX-1, LSY-2, MDL-1, MEF-2, NHR-85, PAG-3, SKN-1, SWSN-7, UNC-130, UNC-86, ZTF-11

Based on reannotated ChIP-seq (peaks are assigned to a target if it is located within 2 kb relative to the transcription start site; targets from L1 stage ChIP-seq data are underlined)

Targeting: no-data

Targeted by: CEH-31, CEH-34, HLH-1, HLH-30, HMG-4, LIN-13, MEP-1, NFYA-1, PHA-4, RNT-1, SYD-9, TBX-2, BLMP-1, C16A3.4, CEH-82, DPL-1, DSC-1, EFL-1, ELT-3, IRX-1, LSY-2, MDL-1, MEF-2, NHR-85, PAG-3, SKN-1, SWSN-7, UNC-130, UNC-86, ZTF-11