ODD-2

WormBase ID: WBGene00003846

WormBase description: Is an ortholog of human OSR1 (odd-skipped related transcription factor 1) and OSR2 (odd-skipped related transciption factor 2). Is predicted to have RNA polymerase II regulatory region sequence-specific DNA binding activity. Is expressed in intestine.

Reporter verification: Verified by PCR and sequencing
Primers used to verify fosmid reporter: 5'-TTCAAATGCGAAATCTGTGG-3'

Strain name: SYS420

Cross: OP405 x JIM113

Strain genotype: ujIs113 (pie-1p::mCherry::H2B; nhr-2p::mCherry::his-24::let858 3'UTR; unc-119(+)) II; wgIs405 (odd-2::TY1::EGFP::3xFLAG + unc-119(+))

Expression pattern: Intestine-specific, Transient-expression

Lineage expression pattern

350 stage

600 stage

3D expression pattern

4-cells

8-cells

15-cells

28-cells

~50-cells

~100-cells

~200-cells

~350-cells

~500-cells

~600-cells

600-cells

bean-stage

Inferred TF relationships

Based on expression similarity (strong, medium, weak): MML-1, ZFH-2, PQM-1, ELT-2, NHR-232, DMD-4, ELT-7, END-1, CEH-51, DVE-1, NHR-102, PHA-4, LAG-1


Based on ChIP-seq (directly from ModERN database, targets from L1 stage ChIP-seq data are underlined)

Targeting: NHR-102, ETS-5, HLH-1, LIM-7, PAL-1

Targeted by: ELT-2, PHA-4

Based on reannotated ChIP-seq (peaks are assigned to a target if it is located within 2 kb relative to the transcription start site; targets from L1 stage ChIP-seq data are underlined)

Targeting: ETS-5, HLH-1, SVH-5

Targeted by: PHA-4