KI information: mNeonGreen knockin at N-terminus
sgRNA1: AGTCCAGCTCCGTTCCTCTT
sgRNA2: TTATCTTCTCTACCTTATTC
5'HR: GCATGCCAAAAAATTCCGATTTTCTCTGAATTTACCTCCTTTTTCATCTAAAAATAGGAAATTTTCGCGGTTTTCTGATCATAAAATGTTCAATTGGCTCGAAAATACACAATTTTCAACGAAAAAAACCGATAAAAATGAATAAAAAGCTGAAAGCTGGCTCGTAAATCGGCACAAGACACAGCGCGCTTCAATGTCTGGCGCGCGTTTGAAAATCGTCGATTTTCTACAATAAAAGGGACTTTTTTTTCCAATTTTTCACATAGATATTTTAAACAAGGAGCAAATTTGGAGCAAAACCTGGAGAATCTTGTTTTTTTTTTTGGTTTTTAACTGAAAATTGACAATTTTACTACAATTTTGTGGGAAATTCTTGAATTTTTTAAAGTTTTTCTGGCAATTTTTGACATTTTCCACCAAAATTTAAATTAATTTCAAAGGGAAAAATTGATTGGTTTCAGACGTGGAAAATCGCAAAATTTTTGATTTTTGTGAAAAAAAAAACCTATTTTTTAGCGTATTTTAAAAATATTTCCACTAAACTCAAATTTAATTTTTTAAAAAATTTTAAAAAATTTCCAGACCGCCCATCCGTCTCCGCTGAGTGCTCGCAAGTGGTGGGGATGCAAATGCTTCTCGAAATGCAACACGGAGCTCGAAAATTCCGGTCGAAACCCGATTAATTGGGCGGATTTATGAATAAATTCTCCTGTCGAACACCCTGCGTCTCTTCATCTCACACACTCTCTCGCCACTCACTGAAGAACTCTGTTATTTATCGATTTTTCTATTTTCTCTTCATTTTTCCTCATTTTTTCCTCATTTTTTCGGTTTTTCATCATAAAAATTCGATTTTCTGGCCATTTTTTTGTTCAATTTCCAATTTTTCATTCGTTTCAACGATTTTTAAATGCTTTTCACGGAAATTGCAGCGAAAAATTGTTTTTTTAACAGAAAAAAAGAGGTACC
3'HR: CTGCAGATGCGGCGACAAAAAACTGAAGAAGAGCGGAGCTGGACTTCAATTTCTCGGCATTTTTTATGCCTTGAATGTAGAAAATATTTTCGGAACAAGGTAGAGAAGATAATATTCTAATTAAATCGCAGAAAATATATTAAAAATTGAAAAAAAAAAACCGATTTTTCCCAAAAAATATATTAAAAAACCGAAAAAATTCCAATTTCTTCTTTAAAAAAATTTAAAAACATTGAAAAATGCTAATTTTTCTTATAAAAAACGAGAAAATTCCGATTTTTCTCTAAAAATATATTAAAAATTGAAATTATTCCGATTTTTCAGTAAAAATATCAAAAAATCAGATTTTTCTCTAAAAATACATTAAAAAATCAGATTTTTCTCTAAAAATACATTAAAAAATCCGTTTTTTTTTTAAATTTATATTAAAAATCGAAAAATTCCGATTTTTCTCTTTAAAAAATCGAAAAAATTGCAATTTTCTCAAAAAAAAATCGAAAAAAAAATTCCAATTTTTCTTTAAAAATATAAATATATATATAAAAAAGCGGAAAAATTCTGATTTTCTCAAAAAAAAAATTACAAATTAAAAAAATCCGACTTTTCTCTAAAAAAATTATTAAAAATCGAAAAAGATTCCTATTTTAATTTAATACAAAAATTAAAAATCGAAAAAAAAATTCGATTTTTCTTTTAAAAAATTTAAAAAATTGAAACATTTCCGATTTTTCTCTAAAAATATATTAAAAGAATCGAAAAAATTCCGATTTTTCTCACAAAATAATTTAAAAAATCAGAAATTTTTTTTTTTTAAACGAATATTTCAATTTTAATTCAAAAAATTTCATTTTTCAGCGCGAGTTCTATTGGCACACCGAAGATTGTCTTATGGAAGCTTTTGAACGAGAAGTTGCTCTAAGCGTATCCCGTGGAGCCGACGAAGATATCGCTGAAAATACTAGT
KI verification primers: Y56A3A.28-NKIF: 5'-GGAATTTTTTTGAAATTTTTAAGGAGA-3' Y56A3A.28-NKIR: 5'-TTCTTCTGATGGTTGATCATCCC-3' Download
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Inferred TF relationships
Based on expression similarity (strong, medium, weak): NHR-35, C16A3.4, CEH-5, PAG-3, BAZ-2, Y73E7A.1, UNC-39, Y48G1C.6, VAB-3, CEH-41, HLH-30, LIN-26, GMEB-1, NHR-25, TAB-1, HAM-2, NHR-23, UNC-130, LIN-1, LIN-32, CEH-32, ALR-1, SOX-2, REF-2, ATF-7, NFI-1, SPTF-1, CEH-43, CRH-2, CEBP-1, EGL-44, ELT-1, Y75B8A.6, HBL-1, EFL-3, ZIP-8
Based on ChIP-seq (directly from ModERN database, targets from L1 stage ChIP-seq data are underlined)
Targeting: no-data
Targeted by: NFYA-1 |
Based on reannotated ChIP-seq (peaks are assigned to a target if it is located within 2 kb relative to the transcription start site; targets from L1 stage ChIP-seq data are underlined)
Targeting: no-data
Targeted by: CEH-48, NFYA-1, DPL-1, EFL-1
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