WormBase ID: WBGene00003218
WormBase description: Exhibits several functions, including enzyme binding activity; identical protein binding activity; and transcription factor binding activity. Is involved in several processes, including hermaphrodite genitalia development; oocyte development; and vulval development. Localizes to nucleus. Is expressed in anchor cell; embryonic cell; excretory cell; germ line; and somatic nervous system. |
Reporter verification: Verified by PCR and sequencing
Primers used to verify fosmid reporter: 5'-GTCGCATGGTCTCGTCACTG-3' |
Strain name: SYS83 Cross: OP70 x JIM113 Strain genotype: ujIs113 (pie-1p::mCherry::H2B; nhr-2p::mCherry::his-24::let858 3'UTR; unc-119(+)) II; wgIs70 (mep-1::TY1::EGFP::3xFLAG + unc-119(+)) |
Expression pattern: Non-specific
|
Lineage expression pattern
350 stage
|
600 stage
 |
3D expression pattern  4-cells  8-cells  15-cells  28-cells  ~50-cells  ~100-cells  ~200-cells  ~350-cells  ~500-cells  ~600-cells  600-cells  bean-stage |
Inferred TF relationships
Based on expression similarity (strong, medium, weak): NA
Based on ChIP-seq (directly from ModERN database, targets from L1 stage ChIP-seq data are underlined)
Targeting: ALY-1, ARID-1, ATFS-1, ATHP-1, CEBP-1, CEH-20, CEH-38, CEH-39, CEH-44, CEH-48, CRH-2, DAF-12, DAF-19, DAF-3, DPFF-1, DUXL-1, EFL-1, EFL-3, EGL-46, EGRH-1, EOR-1, ETS-5, FOS-1, GMEB-1, HLH-11, HLH-30, K09A11.1, LAG-1, LIM-7, LIN-13, LIN-15B, LSY-2, MDL-1, MEF-2, NFI-1, NFYA-1, NHR-102, NHR-12, NHR-49, PHA-4, POP-1, RCOR-1, SDZ-38, SWSN-7, T07F8.4, TAG-68, UNC-37, Y73E7A.1, ZFH-2, ZTF-6, ATF-7, BCL-11, BLMP-1, CAMT-1, CEH-13, CEH-18, CEH-43, DMD-5, EGL-18, EGL-44, ELT-1, HAM-2, HBL-1, HLH-2, IRX-1, LIN-1, LIN-22, LIN-39, MML-1, NHR-10, NHR-23, NHR-25, NHR-35, NHR-85, SEL-8, SEM-4, SKN-1, SMA-2, SPR-4, TLP-1, UNC-62, Y55F3AM.14, Y75B8A.6, ZIP-3, ZTF-30
Targeted by: ALY-1, BLMP-1, CEH-18, CEH-31, CEH-34, CEH-39, CEH-48, CEH-6, CND-1, COG-1, DMD-4, DVE-1, EYG-1, HLH-1, HLH-30, LIN-13, LSY-2, NFYA-1, PHA-4, REF-2, RNT-1, SPTF-1, TBX-2, UNC-120, UNC-42, UNC-55, UNC-62, ZIP-8, ZTF-11, AHA-1, ALY-2, C16A3.4, CEH-8, CEH-82, DPL-1, DSC-1, EFL-1, EGL-13, ELT-2, ELT-3, FKH-10, FKH-4, FKH-8, FOS-1, IRX-1, LIN-39, MDL-1, MEF-2, NHR-85, PAX-3, SKN-1, SWSN-7, UNC-130, UNC-86, VAB-15 |
|
 Based on reannotated ChIP-seq (peaks are assigned to a target if it is located within 2 kb relative to the transcription start site; targets from L1 stage ChIP-seq data are underlined)
Targeting: ALY-1, ARID-1, ATFS-1, ATHP-1, CEBP-1, CEH-20, CEH-39, CEH-48, CEH-5, CEH-74, CRH-2, DAF-19, DPFF-1, DPL-1, DUXL-1, EFL-1, EFL-3, EGL-46, EOR-1, ETS-5, GMEB-1, HLH-30, K09A11.1, K10B3.5, LAG-1, LIN-13, LIN-15B, LSY-2, MDL-1, MEF-2, NFI-1, NFYA-1, NFYC-1, NHR-12, NHR-49, POP-1, RCOR-1, SWSN-7, T07F8.4, UNC-37, Y73E7A.1, ATF-7, BLMP-1, CAMT-1, CEH-13, DAF-3, DMD-5, EGL-44, ELT-1, HAM-2, HBL-1, IRX-1, LIN-39, MML-1, NHR-10, NHR-23, NHR-25, NHR-35, NHR-85, SKN-1, SMA-2, SVH-5, TLP-1, UNC-62, ZIP-3, ZTF-30
Targeted by: ALY-1, CEH-18, CEH-31, CEH-34, CEH-39, CEH-6, CND-1, COG-1, DMD-4, DVE-1, EYG-1, HLH-1, HLH-30, LIN-13, LSY-2, NFYA-1, PHA-4, REF-2, RNT-1, SPTF-1, TBX-2, UNC-120, UNC-42, UNC-55, UNC-62, ZTF-11, AHA-1, ALY-2, BLMP-1, C16A3.4, CEH-8, CEH-82, DPL-1, DSC-1, EFL-1, EGL-13, ELT-3, FKH-4, FKH-8, FOS-1, MDL-1, MEF-2, SKN-1, SWSN-7, UNC-130, UNC-86
|