EGRH-1

WormBase ID: WBGene00007772

WormBase description: Is an ortholog of human EGR1 (early growth response 1); EGR2 (early growth response 2); and EGR3 (early growth response 3). Is predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific. Is involved in negative regulation of MAP kinase activity; negative regulation of oocyte maturation; and negative regulation of ovulation. Localizes to nucleus and perinuclear region of cytoplasm. Is expressed in body wall musculature; hermaphrodite somatic gonadal cell; nervous system; pharynx; and sperm. Human ortholog(s) of this gene are implicated in several diseases, including Charcot-Marie-Tooth disease (multiple); Denys-Drash syndrome; and Frasier syndrome.

KI information: mNeonGreen knockin at N-terminus

sgRNA1: ATGAGAGTGCCTATTAAGTT

sgRNA2: CTGTTGTTGCAGAATCAGGA

5'HR: GCATGCTGAGAACGCGATAATTCTGAAAACTGCATATCTCTAGAGGCTCAACTGATACTGATATAAATACCGACTATAAATCTAGATTGAGTATATATTATTTTTTTGGTTCTAGATTCTTCCAATCATTGTTTTCCTCCTCATTTGTATGTTATGGCAATTCCCGCCTCTCGATTCCTCCAAGCGATTTTTGTATTGCCTCTCCGTCTCCATGTCATACAAAACCGTCGTGGAACGAGATGGACAACGAGAATGTGATTCCCCTTTTTTTGGTTGTAGGTGCGTGGGTGAAAGGACGGGCCGCAGGGGCTACTGCATTTGTAATTCACAAAATTTCGATTCCACACTCTCTTCCTCGTCTTTCTTTTTTCCTTCTCCCCCCCCCCCCCCCTTCTTGCATTTTTTCCTTAGTTTGGTTTTCGTTTCACCGGGTTTCACAGACTTATTCATTGCTCGAAAACTAGAAGAATTTCATAATTATAGAGTACACTTTTGGGTTTTGCAAGTTTGAGCGAATTTCAAGTTTCGCAAAAAAGCTGATCTATCTAGAGCTTACACCTGATAGTTCAAAAATTTTCTTTTTTGTTCTAATAATTTTCAATTAAAAATTGAATAATAACTAACAACATGTGCCACTTGGGGGAAGCAACGATCTCCTTTCGAACATTAAAAAAAATCTTGCCATAACTTGCCCATAACCTAAAAATTTATTTGCAATGAAAGAAAATGTTTCCGCCTTTCTGGTTTTAGGTTAGACTTCCTTCCGGCTTTTCCAATTTCCCAATTTTTTTGCGTCGCCAAATATGACAACCTTCTCCTTTTCCAAGAGCTCCGCCCATTAATCAAAAGGACTAGATATTTCTGAATTTTGAACCAACACTTCTCACGCGTTTATTTATTTTCCCTTTTACCGAAATACTTCTATTAATTTTTTCTGTTGTTGCAGAATCAGGGGTACC

3'HR: CTGCAGATGGCACTTCACGAGCCACCTTCTAAACTCAATAGGCACTCTCATTCAAATTTATTAAAACCTCCGTCATTAAATAAACCAATACTGACGTTTGCTGACAATGATTGCCTGAAAACGCCAACTATGAATGATATGCTTAAGGTGAGAAGTTACACCTTGAATTGTCTGAAACTAAACCATATTCTTGCAGACACCCACAGTAAATTCACCACGACACACACCGATGAATATTGACGGGACGCCTAAAGTCAATGGATTTTCTGGATTTACTCCTCAAACCGATCAGAAATTCTTTGGCGAGCACGAGCCACTGTTCAACCAAATGCACACAACAACACTAATGCCGGCACCATCATCGTCATACAAGGAGCCAGCTTACAGTAGTGAGCAGCCGTCTAGCTCTTCGGATGAGGCGAAGCCTAAGGAGCTGCTAGGAAGTAATAGTTTTGGAGTACCGCGCATGACGAACGGGAACAGTAAGCAGAAACCAGAAGAGTTGACGTTAAAAGATATTGAGATCAGTTCTACAGGACCGGGTGGTGTAGATTCTCCAGGTTTGTATACAAAAGTTTTGATTTTGAAGCCAACTTTAATGAATTTTCAGGCTTATCTGCTGCCATGTTCCAGTTTTCGCCAATGGTAGAACACTTTTTGCAAAATCTCACTAATAAAGCAGGCCTGCCAGAATTAGTTGTGGACTCTAAAACAGCGGGATTAAACCATCAAGAACCATCCGATTTGATAAAGGTACGAGAGTGTGTGCCCACACTGAAATATATATTAGAGTATTTTTTTAAATTACGAATAACTGAAAATACTGTGTCTAAAAAAAATTAAAATTAAAAAAACACACTTTTTTTTTGCTTTCAGCGTTCATTCTCATAATAACTTATGAATTTATAATTTCAGTCTGTCCAAGTACGGAGGAGCTCGATAGAGGATCAAAAATTCAGACTAGT

KI verification primers: EGRH-1-NKIF: 5'-CGAAACGTTATCAATAATCTCGTGAT-3' EGRH-1-NKIR: 5'-GAAGAGAAGACCCAAGATGCGA-3'

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Strain name: SYS444

KI background: JIM113

Strain genotype: ujIs113 (pie-1p::mCherry::H2B; nhr-2p::mCherry::his-24::let858 3'UTR; unc-119(+)) II; egrh-1 (devKi113 [mNeonGreen::egrh-1]) X

Expression pattern: Non-specific

Lineage expression pattern

350 stage



600 stage

3D expression pattern

4-cells

8-cells

15-cells

28-cells

~50-cells

~100-cells

~200-cells

~350-cells

~500-cells

~600-cells

600-cells

bean-stage

Inferred TF relationships

Based on expression similarity (strong, medium, weak): NA


Based on ChIP-seq (directly from ModERN database, targets from L1 stage ChIP-seq data are underlined)

Targeting: no-data

Targeted by: BCL-11, CEH-14, CEH-18, CEH-19, CEH-2, CEH-31, CEH-34, CEH-39, CND-1, COG-1, DMD-4, DVE-1, ELT-2, FKH-6, HLH-1, HLH-30, HLH-8, HMG-4, LIM-6, LSY-2, MEP-1, NFYA-1, PAG-3, PHA-2, PHA-4, PROS-1, REF-2, RNT-1, SYD-9, TBX-2, UNC-120, UNC-3, UNC-42, UNC-55, UNC-62, ALY-2, BLMP-1, C16A3.4, CEH-8, CEH-82, DPL-1, DSC-1, EFL-1, EGL-13, ELT-3, FKH-10, FKH-8, FOS-1, IRX-1, LIN-13, LIN-39, MDL-1, MEF-2, PAX-3, SKN-1, SOX-4, SWSN-7, UNC-130, UNC-86, ZAG-1, ZTF-11

Based on reannotated ChIP-seq (peaks are assigned to a target if it is located within 2 kb relative to the transcription start site; targets from L1 stage ChIP-seq data are underlined)

Targeting: no-data

Targeted by: FKH-8, UNC-86